main page — CS 594 Algorithms of Bioinformatics
Unit 4: Assembling Genomes
This unit covers the problem of assembling genomes from sequencing reads:
- fragment assembly problem
- overlap graphs
- de Bruijn graphs
- assembly algorithms
Material
Further sources
- Compeau & Pevzner, Bioinformatics Algorithms: An Active Learning Approach, Chapter 4
- Nebel, Algorithmen der Bioinformatik